Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3045862..3046130 | Replicon | chromosome |
| Accession | NZ_CP104848 | ||
| Organism | Escherichia coli strain DFK.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3045900..3046002 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3045862..3046130 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N7218_RS15295 | 3043020..3044459 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N7218_RS15300 | 3044576..3044812 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N7218_RS15305 | 3044917..3045108 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N7218_RS15310 | 3045109..3045765 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 3045862..3046130 | + | 269 | - | - | Antitoxin |
| - | 3045900..3046002 | - | 103 | - | - | Toxin |
| N7218_RS15315 | 3046160..3046501 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N7218_RS15320 | 3046514..3047386 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| N7218_RS15325 | 3047390..3047764 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N7218_RS15330 | 3047903..3048133 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N7218_RS15335 | 3048235..3048891 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N7218_RS15340 | 3048915..3049577 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T259303 NZ_CP104848:c3046002-3045900 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT259303 NZ_CP104848:3045862-3046130 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
