Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2926535..2926803 Replicon chromosome
Accession NZ_CP104846
Organism Escherichia coli strain DFS.1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2926573..2926675 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2926535..2926803 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N7219_RS14650 2923693..2925132 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
N7219_RS14655 2925249..2925485 + 237 WP_001295499.1 YebV family protein -
N7219_RS14660 2925590..2925781 + 192 WP_001296140.1 YebW family protein -
N7219_RS14665 2925782..2926438 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 2926535..2926803 + 269 - - Antitoxin
- 2926573..2926675 - 103 - - Toxin
N7219_RS14670 2926833..2927174 - 342 WP_000976472.1 YebY family protein -
N7219_RS14675 2927187..2928059 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
N7219_RS14680 2928063..2928437 - 375 WP_000168747.1 CopC domain-containing protein YobA -
N7219_RS14685 2928576..2928806 + 231 WP_000916763.1 DNA polymerase III subunit theta -
N7219_RS14690 2928908..2929564 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein YobB -
N7219_RS14695 2929588..2930250 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T259268 NZ_CP104846:c2926675-2926573 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT259268 NZ_CP104846:2926535-2926803 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References