Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 1876705..1877275 Replicon chromosome
Accession NZ_CP104757
Organism Pectobacterium aroidearum strain QJ021

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N5056_RS08335 Protein ID WP_181838233.1
Coordinates 1876991..1877275 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N5056_RS08330 Protein ID WP_181838234.1
Coordinates 1876705..1876944 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N5056_RS08300 (N5056_08300) 1872640..1873176 + 537 WP_181828281.1 rhodanese family protein -
N5056_RS08305 (N5056_08305) 1873242..1873571 + 330 WP_181828282.1 DHCW motif cupin fold protein -
N5056_RS08310 (N5056_08310) 1873806..1874270 + 465 WP_181828283.1 GyrI-like domain-containing protein -
N5056_RS08315 (N5056_08315) 1874430..1875308 - 879 WP_181828284.1 cell envelope biogenesis protein OmpA -
N5056_RS08320 (N5056_08320) 1875926..1876051 - 126 WP_258876276.1 hypothetical protein -
N5056_RS08325 (N5056_08325) 1876288..1876647 - 360 WP_181838235.1 hypothetical protein -
N5056_RS08330 (N5056_08330) 1876705..1876944 - 240 WP_181838234.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
N5056_RS08335 (N5056_08335) 1876991..1877275 - 285 WP_181838233.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N5056_RS08340 (N5056_08340) 1877265..1877510 - 246 WP_010286544.1 CopG family ribbon-helix-helix protein -
N5056_RS08345 (N5056_08345) 1878029..1878961 + 933 WP_181838232.1 hypothetical protein -
N5056_RS08350 (N5056_08350) 1878958..1879512 + 555 WP_181838231.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(2-77)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11067.89 Da        Isoelectric Point: 10.2808

>T259119 WP_181838233.1 NZ_CP104757:c1877275-1876991 [Pectobacterium aroidearum]
MEIKWLRKAAANLEAEYRYIAQDDPQAASQFVDEVQRLTELLPQQPAMGRPGRVPGTRELVLTHYPYIIPYRVKGNMLQI
LRIFHTHRRLPAKW

Download         Length: 285 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9211.67 Da        Isoelectric Point: 6.3423

>AT259119 WP_181838234.1 NZ_CP104757:c1876944-1876705 [Pectobacterium aroidearum]
MGNVTCRIDDDLKRRSYAALKKLGITPSEALRLTLEYVAENERLPFKQKLLNDEDVELVEVVRERLRNPKPVRMTLDDL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References