259114

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbDE/ParE-DnaT
Location 353306..353876 Replicon chromosome
Accession NZ_CP104757
Organism Pectobacterium aroidearum strain QJ021

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag N5056_RS01630 Protein ID WP_181829972.1
Coordinates 353550..353876 (+) Length 109 a.a.

Antitoxin (Protein)


Gene name stbD Uniprot ID -
Locus tag N5056_RS01625 Protein ID WP_180778477.1
Coordinates 353306..353560 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N5056_RS01600 (N5056_01600) 348553..349143 - 591 WP_012773024.1 DnaA initiator-associating protein DiaA -
N5056_RS01605 (N5056_01605) 349207..349602 - 396 WP_181830009.1 YraN family protein -
N5056_RS01610 (N5056_01610) 349560..351578 - 2019 WP_181829974.1 penicillin-binding protein activator -
N5056_RS01615 (N5056_01615) 351640..352527 + 888 WP_181829973.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
N5056_RS01625 (N5056_01625) 353306..353560 + 255 WP_180778477.1 plasmid stabilization protein Antitoxin
N5056_RS01630 (N5056_01630) 353550..353876 + 327 WP_181829972.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N5056_RS01635 (N5056_01635) 354001..354786 + 786 WP_181829971.1 4,5-DOPA dioxygenase extradiol -
N5056_RS01640 (N5056_01640) 354856..356016 - 1161 WP_180778474.1 glutathionylspermidine synthase family protein -
N5056_RS01645 (N5056_01645) 356028..356702 - 675 WP_012773030.1 DUF1190 family protein -
N5056_RS01650 (N5056_01650) 356969..358360 - 1392 WP_181829970.1 outer membrane channel protein TolC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-87)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 109 a.a.        Molecular weight: 12390.64 Da        Isoelectric Point: 10.6902

>T259114 WP_181829972.1 NZ_CP104757:353550-353876 [Pectobacterium aroidearum]
MTYKLKFVPSAMKEWKKLGHPVREQFKKKLVERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQDETITVMVMGVGK
REGSQVYSDTKSGLLRVIYSSSAVFLAV

Download         Length: 327 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9240.44 Da        Isoelectric Point: 3.7947

>AT259114 WP_180778477.1 NZ_CP104757:353306-353560 [Pectobacterium aroidearum]
MAFNILTNTAASITELKRDPMGTVRAAEGETIAILNRNEPAFYCVPPAMFAYLMELAEDAELGRTVDDRMSELADAEEIS
LDDL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References