Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3672215..3672740 Replicon chromosome
Accession NZ_CP104733
Organism Pectobacterium sp. F1-1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NAL19_RS16415 Protein ID WP_039534786.1
Coordinates 3672215..3672499 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID C6D956
Locus tag NAL19_RS16420 Protein ID WP_005973616.1
Coordinates 3672489..3672740 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NAL19_RS16395 (NAL19_3533) 3668279..3669130 - 852 WP_263057898.1 TauD/TfdA family dioxygenase -
NAL19_RS16400 (NAL19_3534) 3669185..3670141 - 957 WP_263057899.1 isocyanide synthase family protein -
NAL19_RS16405 3670389..3671197 + 809 Protein_3202 IS5 family transposase -
NAL19_RS16410 3671236..3671900 + 665 Protein_3203 transposase -
NAL19_RS16415 (NAL19_3539) 3672215..3672499 - 285 WP_039534786.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NAL19_RS16420 (NAL19_3540) 3672489..3672740 - 252 WP_005973616.1 prevent-host-death protein Antitoxin
NAL19_RS16425 (NAL19_3541) 3673333..3675132 + 1800 WP_263057900.1 AIPR family protein -
NAL19_RS16430 3675238..3675437 - 200 Protein_3207 capsid portal protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10980.93 Da        Isoelectric Point: 10.1716

>T259090 WP_039534786.1 NZ_CP104733:c3672499-3672215 [Pectobacterium sp. F1-1]
MSYKLEFEEHALKEFKKLGAPVREQFTKKLKEVLQNPHVPANRLHGMADCYKIKLRSAGYRLVYQVLEHEIVVLVLAVGK
RERSEVYKAAKDRL

Download         Length: 285 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9079.35 Da        Isoelectric Point: 5.0807

>AT259090 WP_005973616.1 NZ_CP104733:c3672740-3672489 [Pectobacterium sp. F1-1]
MSVQPILANAAVSISDFKKSPNAALKEANGEPVAVLTNGRISGYYVSPETWEALADYQEDIELAKIARSRMKGKRVKVDL
DEL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A0G4JQP6

References