259082

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbDE/ParE-DnaT
Location 351119..351599 Replicon chromosome
Accession NZ_CP104733
Organism Pectobacterium sp. F1-1

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag NAL19_RS01610 Protein ID WP_263058566.1
Coordinates 351363..351599 (+) Length 79 a.a.

Antitoxin (Protein)


Gene name stbD Uniprot ID -
Locus tag NAL19_RS01605 Protein ID WP_180743904.1
Coordinates 351119..351373 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NAL19_RS01580 (NAL19_331) 346268..346858 - 591 WP_012773024.1 DnaA initiator-associating protein DiaA -
NAL19_RS01585 (NAL19_332) 346899..347255 - 357 WP_225088074.1 YraN family protein -
NAL19_RS01590 (NAL19_333) 347252..349264 - 2013 WP_263058564.1 penicillin-binding protein activator -
NAL19_RS01595 (NAL19_334) 349326..350213 + 888 WP_263058565.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
NAL19_RS01605 (NAL19_335) 351119..351373 + 255 WP_180743904.1 plasmid stabilization protein Antitoxin
NAL19_RS01610 (NAL19_336) 351363..351599 + 237 WP_263058566.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NAL19_RS01615 (NAL19_337) 351827..352612 + 786 WP_263058567.1 4,5-DOPA dioxygenase extradiol -
NAL19_RS01620 (NAL19_338) 352682..353842 - 1161 WP_263058568.1 glutathionylspermidine synthase family protein -
NAL19_RS01625 (NAL19_339) 353853..354527 - 675 WP_263058569.1 DUF1190 family protein -
NAL19_RS01630 (NAL19_340) 354796..356187 - 1392 WP_263058570.1 outer membrane channel protein TolC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-77)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 79 a.a.        Molecular weight: 9161.94 Da        Isoelectric Point: 10.7488

>T259082 WP_263058566.1 NZ_CP104733:351363-351599 [Pectobacterium sp. F1-1]
MTYKLKFVPSAMKEWKKLGHPVREQFKKKLAERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQDETITVMVMGV

Download         Length: 237 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9256.44 Da        Isoelectric Point: 3.7947

>AT259082 WP_180743904.1 NZ_CP104733:351119-351373 [Pectobacterium sp. F1-1]
MAFNILTNTAASITELKRDPMGTVRSAEGETIAILNRNEPAFYCVPPAMFAYLMELAEDAELGRTVDDRMSELADAEEIS
LDDL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References