Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) slvAT/RES(toxin)
Location 4428739..4429445 Replicon chromosome
Accession NZ_CP104727
Organism Pseudomonas citronellolis strain G5.80

Toxin (Protein)


Gene name slvT Uniprot ID -
Locus tag N5P21_RS19315 Protein ID WP_261746160.1
Coordinates 4428739..4429077 (-) Length 113 a.a.

Antitoxin (Protein)


Gene name slvA Uniprot ID -
Locus tag N5P21_RS19320 Protein ID WP_261746161.1
Coordinates 4429074..4429445 (-) Length 124 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N5P21_RS19305 (N5P21_19325) 4423788..4425536 - 1749 WP_261746158.1 ATP-binding protein -
N5P21_RS19310 (N5P21_19330) 4425685..4428540 + 2856 WP_261746159.1 conjugative transfer ATPase -
N5P21_RS19315 (N5P21_19335) 4428739..4429077 - 339 WP_261746160.1 RES family NAD+ phosphorylase Toxin
N5P21_RS19320 (N5P21_19340) 4429074..4429445 - 372 WP_261746161.1 MbcA/ParS/Xre antitoxin family protein Antitoxin
N5P21_RS19325 (N5P21_19345) 4429662..4429859 + 198 WP_261746162.1 hypothetical protein -
N5P21_RS19330 (N5P21_19350) 4430486..4431286 - 801 WP_261746163.1 SDR family oxidoreductase -
N5P21_RS19335 (N5P21_19355) 4431389..4432591 - 1203 WP_261746164.1 cytochrome P450 -
N5P21_RS19340 (N5P21_19360) 4432744..4433436 + 693 WP_261746165.1 TetR/AcrR family transcriptional regulator -
N5P21_RS19345 (N5P21_19365) 4433657..4434091 + 435 WP_261746166.1 TIGR03757 family integrating conjugative element protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4383376..4455603 72227


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(14-101)

Antitoxin

Antitoxin Xre/MbcA/ParS-like, toxin-binding domain

(71-120)


Sequences

Toxin        


Download         Length: 113 a.a.        Molecular weight: 12387.15 Da        Isoelectric Point: 4.3950

>T259073 WP_261746160.1 NZ_CP104727:c4429077-4428739 [Pseudomonas citronellolis]
MISKTLGADGAEAFYRIIVPAYAGMPLSGMGAACQGGRFNRPDQEALYLALDEATALAECKQDNPWIRLGTICTLFVNGL
RVADLSAGFVPDRWPPLWADYTVDWRAEWFDK

Download         Length: 339 bp

Antitoxin


Download         Length: 124 a.a.        Molecular weight: 13787.66 Da        Isoelectric Point: 6.8809

>AT259073 WP_261746161.1 NZ_CP104727:c4429445-4429074 [Pseudomonas citronellolis]
MDTVLQEPFVERFREPNTPYLSPSKVGDFFGFRVHELAERAHVHRNTPTARPHAPQLQKYLQDMVRVLAVATEMTGDVQR
AVFLLRNEPLRAFGYKTADTLIQEGRADAVIAYLESFAGGAAG

Download         Length: 372 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References