Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 2185206..2185750 | Replicon | chromosome |
| Accession | NC_016804 | ||
| Organism | Mycobacterium bovis BCG str. Mexico | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | G0TLU9 |
| Locus tag | BCGMEX_RS10145 | Protein ID | WP_003409896.1 |
| Coordinates | 2185206..2185502 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | P67299 |
| Locus tag | BCGMEX_RS10150 | Protein ID | WP_003409899.1 |
| Coordinates | 2185499..2185750 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCGMEX_RS10090 | 2180239..2180589 | - | 351 | WP_003409871.1 | hypothetical protein | - |
| BCGMEX_RS10095 | 2180600..2181502 | - | 903 | WP_003409874.1 | hypothetical protein | - |
| BCGMEX_RS10100 | 2181523..2181714 | - | 192 | WP_003409876.1 | hypothetical protein | - |
| BCGMEX_RS10105 | 2181715..2182011 | - | 297 | WP_003409877.1 | hypothetical protein | - |
| BCGMEX_RS10110 | 2182251..2182466 | + | 216 | WP_003409878.1 | antitoxin | - |
| BCGMEX_RS10115 | 2182463..2182774 | + | 312 | WP_003409881.1 | type II toxin-antitoxin system VapC family toxin | - |
| BCGMEX_RS22105 | 2182748..2183269 | - | 522 | WP_010950637.1 | hypothetical protein | - |
| BCGMEX_RS10125 | 2183244..2183621 | + | 378 | WP_010886136.1 | type II toxin-antitoxin system toxin HigB | - |
| BCGMEX_RS10130 | 2183663..2184112 | + | 450 | WP_003409886.1 | type II toxin-antitoxin system antitoxin HigA | - |
| BCGMEX_RS10135 | 2184109..2184654 | + | 546 | WP_003409891.1 | SecB-like chaperone | - |
| BCGMEX_RS10140 | 2184543..2185157 | - | 615 | WP_003901296.1 | hypothetical protein | - |
| BCGMEX_RS10145 | 2185206..2185502 | - | 297 | WP_003409896.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| BCGMEX_RS10150 | 2185499..2185750 | - | 252 | WP_003409899.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| BCGMEX_RS10155 | 2185737..2186231 | + | 495 | WP_003899099.1 | hypothetical protein | - |
| BCGMEX_RS10160 | 2186391..2186798 | - | 408 | WP_003409913.1 | type II toxin-antitoxin system VapC family toxin | - |
| BCGMEX_RS10165 | 2186802..2187074 | - | 273 | WP_003899100.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| BCGMEX_RS10170 | 2187107..2188327 | - | 1221 | WP_003409919.1 | TetR family transcriptional regulator Mce3R | - |
| BCGMEX_RS10180 | 2189226..2189531 | + | 306 | Protein_1989 | ABC transporter permease | - |
| BCGMEX_RS10185 | 2189715..2190239 | + | 525 | WP_011799234.1 | methyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11268.64 Da Isoelectric Point: 6.8604
>T25906 WP_003409896.1 NC_016804:c2185502-2185206 [Mycobacterium tuberculosis variant bovis BCG str. Mexico]
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
Download Length: 297 bp
>T25906 NC_016804:c2185502-2185206 [Mycobacterium tuberculosis variant bovis BCG str. Mexico]
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9207.17 Da Isoelectric Point: 7.0150
>AT25906 WP_003409899.1 NC_016804:c2185750-2185499 [Mycobacterium tuberculosis variant bovis BCG str. Mexico]
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
Download Length: 252 bp
>AT25906 NC_016804:c2185750-2185499 [Mycobacterium tuberculosis variant bovis BCG str. Mexico]
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G0TLU9 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U4BUZ2 |