Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2711271..2711425 | Replicon | chromosome |
| Accession | NZ_CP104724 | ||
| Organism | Enterobacter kobei strain SG.H2a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2711287..2711390 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2711271..2711425 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5P26_RS12760 (N5P26_12760) | 2707547..2708989 | + | 1443 | WP_045134186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5P26_RS12765 (N5P26_12765) | 2709096..2709335 | + | 240 | WP_008500472.1 | YebV family protein | - |
| N5P26_RS12770 (N5P26_12770) | 2709370..2710014 | - | 645 | WP_045134187.1 | protein-serine/threonine phosphatase | - |
| N5P26_RS12775 (N5P26_12775) | 2710182..2711123 | + | 942 | WP_045134188.1 | VirK/YbjX family protein | - |
| - | 2711271..2711425 | + | 155 | - | - | Antitoxin |
| - | 2711287..2711390 | - | 104 | - | - | Toxin |
| N5P26_RS12780 (N5P26_12780) | 2711529..2711867 | - | 339 | WP_014884299.1 | YebY family protein | - |
| N5P26_RS12785 (N5P26_12785) | 2711884..2712753 | - | 870 | WP_045134189.1 | copper homeostasis membrane protein CopD | - |
| N5P26_RS12790 (N5P26_12790) | 2712755..2713126 | - | 372 | WP_023338431.1 | CopC domain-containing protein YobA | - |
| N5P26_RS12795 (N5P26_12795) | 2713264..2713494 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| N5P26_RS12800 (N5P26_12800) | 2713605..2714255 | + | 651 | WP_014884302.1 | carbon-nitrogen hydrolase family protein | - |
| N5P26_RS12805 (N5P26_12805) | 2714280..2714942 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259059 NZ_CP104724:c2711390-2711287 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT259059 NZ_CP104724:2711271-2711425 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
