Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2110639..2110910 Replicon chromosome
Accession NZ_CP104721
Organism Escherichia coli strain ECO3183

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2110769..2110872 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2110639..2110910 (-)

Genomic Context

N5O92_RS10140N5O92_RS10145N5O92_RS10150--N5O92_RS10155N5O92_RS10125N5O92_RS10130N5O92_RS10135--N5O92_RS10160N5O92_RS10165N5O92_RS10170
Location: 2109007..2109381 (375 bp)
Type: Others
Protein ID: WP_000168747.1
Location: 2109385..2110257 (873 bp)
Type: Others
Protein ID: WP_000879289.1
Location: 2110270..2110611 (342 bp)
Type: Others
Protein ID: WP_000976476.1
Location: 2110769..2110872 (104 bp)
Type: Toxin
Protein ID: -
Location: 2111007..2111663 (657 bp)
Type: Others
Protein ID: WP_000812724.1
Location: 2107194..2107856 (663 bp)
Type: Others
Protein ID: WP_000944256.1
Location: 2107880..2108536 (657 bp)
Type: Others
Protein ID: WP_000011658.1
Location: 2108638..2108868 (231 bp)
Type: Others
Protein ID: WP_000916763.1
Location: 2110639..2110910 (272 bp)
Type: Antitoxin
Protein ID: -
Location: 2111664..2111855 (192 bp)
Type: Others
Protein ID: WP_000457842.1
Location: 2111960..2112196 (237 bp)
Type: Others
Protein ID: WP_001295499.1
Location: 2112314..2113753 (1440 bp)
Type: Others
Protein ID: WP_001352260.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
N5O92_RS101252107194..2107856-663WP_000944256.1exodeoxyribonuclease X-
N5O92_RS101302107880..2108536-657WP_000011658.1carbon-nitrogen hydrolase family protein YobB-
N5O92_RS101352108638..2108868-231WP_000916763.1DNA polymerase III subunit theta-
N5O92_RS101402109007..2109381+375WP_000168747.1CopC domain-containing protein YobA-
N5O92_RS101452109385..2110257+873WP_000879289.1copper homeostasis membrane protein CopD-
N5O92_RS101502110270..2110611+342WP_000976476.1YebY family protein-
-2110639..2110910-272--Antitoxin
-2110769..2110872+104--Toxin
N5O92_RS101552111007..2111663+657WP_000812724.1protein-serine/threonine phosphatase-
N5O92_RS101602111664..2111855-192WP_000457842.1YebW family protein-
N5O92_RS101652111960..2112196-237WP_001295499.1YebV family protein-
N5O92_RS101702112314..2113753-1440WP_001352260.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T259042 NZ_CP104721:2110769-2110872 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT259042 NZ_CP104721:c2110910-2110639 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References