Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4180511..4180720 | Replicon | chromosome |
| Accession | NZ_CP104691 | ||
| Organism | Enterobacter hormaechei strain 2022CK-00453 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4180604..4180707 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4180511..4180720 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5934_RS20205 (N5934_20205) | 4177048..4177710 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| N5934_RS20210 (N5934_20210) | 4177735..4178385 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| N5934_RS20215 (N5934_20215) | 4178497..4178727 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| N5934_RS20220 (N5934_20220) | 4178865..4179236 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| N5934_RS20225 (N5934_20225) | 4179238..4180107 | + | 870 | WP_110870475.1 | copper homeostasis membrane protein CopD | - |
| N5934_RS20230 (N5934_20230) | 4180124..4180462 | + | 339 | WP_110870477.1 | YebY family protein | - |
| - | 4180511..4180720 | - | 210 | - | - | Antitoxin |
| N5934_RS20235 (N5934_20235) | 4180588..4180785 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 4180604..4180707 | + | 104 | - | - | Toxin |
| N5934_RS20240 (N5934_20240) | 4180831..4181811 | - | 981 | WP_045345038.1 | VirK/YbjX family protein | - |
| N5934_RS20245 (N5934_20245) | 4181979..4182623 | + | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| N5934_RS20250 (N5934_20250) | 4182658..4182897 | - | 240 | WP_003859885.1 | YebV family protein | - |
| N5934_RS20255 (N5934_20255) | 4183004..4184452 | - | 1449 | WP_195764999.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259017 NZ_CP104691:4180604-4180707 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT259017 NZ_CP104691:c4180720-4180511 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
