Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2068781..2069052 | Replicon | chromosome |
| Accession | NZ_CP104681 | ||
| Organism | Escherichia coli strain 2022CK-00450 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2068911..2069014 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2068781..2069052 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5922_RS09980 | 2065336..2065998 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N5922_RS09985 | 2066022..2066678 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5922_RS09990 | 2066780..2067010 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5922_RS09995 | 2067149..2067523 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| N5922_RS10000 | 2067527..2068399 | + | 873 | Protein_1953 | copper homeostasis membrane protein CopD | - |
| N5922_RS10005 | 2068412..2068753 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2068781..2069052 | - | 272 | - | - | Antitoxin |
| - | 2068911..2069014 | + | 104 | - | - | Toxin |
| N5922_RS10010 | 2069149..2069805 | + | 657 | WP_222214389.1 | protein-serine/threonine phosphatase | - |
| N5922_RS10015 | 2069806..2069997 | - | 192 | WP_001313035.1 | YebW family protein | - |
| N5922_RS10020 | 2070102..2070338 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N5922_RS10025 | 2070456..2071895 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258985 NZ_CP104681:2068911-2069014 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258985 NZ_CP104681:c2069052-2068781 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
