Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2194278..2194549 | Replicon | chromosome |
| Accession | NZ_CP104665 | ||
| Organism | Escherichia coli strain 2021CK-00607 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2194408..2194511 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2194278..2194549 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5914_RS10305 | 2190833..2191495 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N5914_RS10310 | 2191519..2192175 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5914_RS10315 | 2192277..2192507 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5914_RS10320 | 2192646..2193020 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| N5914_RS10325 | 2193024..2193896 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| N5914_RS10330 | 2193909..2194250 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2194278..2194549 | - | 272 | - | - | Antitoxin |
| - | 2194408..2194511 | + | 104 | - | - | Toxin |
| N5914_RS10335 | 2194646..2195302 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| N5914_RS10340 | 2195303..2195494 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N5914_RS10345 | 2195599..2195835 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N5914_RS10350 | 2195953..2197392 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258917 NZ_CP104665:2194408-2194511 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258917 NZ_CP104665:c2194549-2194278 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
