Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061739..2061884 | Replicon | chromosome |
| Accession | NZ_CP104660 | ||
| Organism | Klebsiella pneumoniae strain 2021CK-01729 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061775..2061877 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061739..2061884 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4T33_RS09855 (N4T33_09855) | 2056869..2058929 | + | 2061 | WP_032409019.1 | oligopeptidase B | - |
| N4T33_RS09860 (N4T33_09860) | 2058933..2059592 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| N4T33_RS09865 (N4T33_09865) | 2059671..2059901 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N4T33_RS09870 (N4T33_09870) | 2060014..2060388 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N4T33_RS09875 (N4T33_09875) | 2060392..2061261 | + | 870 | WP_023316211.1 | copper homeostasis membrane protein CopD | - |
| N4T33_RS09880 (N4T33_09880) | 2061278..2061616 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2061739..2061884 | - | 146 | - | - | Antitoxin |
| - | 2061775..2061877 | + | 103 | - | - | Toxin |
| N4T33_RS09885 (N4T33_09885) | 2062252..2062395 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N4T33_RS09890 (N4T33_09890) | 2062500..2063468 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| N4T33_RS09895 (N4T33_09895) | 2063625..2064278 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| N4T33_RS09900 (N4T33_09900) | 2064275..2064466 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N4T33_RS09905 (N4T33_09905) | 2064564..2064803 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N4T33_RS09910 (N4T33_09910) | 2064919..2066352 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T258899 NZ_CP104660:2061775-2061877 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT258899 NZ_CP104660:c2061884-2061739 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
