Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 951162..951307 | Replicon | chromosome |
| Accession | NZ_CP104659 | ||
| Organism | Klebsiella pneumoniae strain 2020CK-00096 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 951198..951300 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 951162..951307 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5936_RS04530 | 946292..948352 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| N5936_RS04535 | 948356..949015 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| N5936_RS04540 | 949094..949324 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N5936_RS04545 | 949437..949811 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N5936_RS04550 | 949815..950684 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| N5936_RS04555 | 950701..951039 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 951162..951307 | - | 146 | - | - | Antitoxin |
| - | 951198..951300 | + | 103 | - | - | Toxin |
| N5936_RS04560 | 951675..951818 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N5936_RS04565 | 951923..952891 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| N5936_RS04570 | 953048..953701 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| N5936_RS04575 | 953698..953889 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N5936_RS04580 | 953987..954226 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N5936_RS04585 | 954342..955775 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T258881 NZ_CP104659:951198-951300 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT258881 NZ_CP104659:c951307-951162 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
