Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/-
Location 521839..522475 Replicon chromosome
Accession NZ_CP104651
Organism Acinetobacter variabilis strain 2021CK-01005

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag N5980_RS02535 Protein ID WP_175966132.1
Coordinates 522089..522475 (+) Length 129 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag N5980_RS02530 Protein ID WP_125278962.1
Coordinates 521839..522096 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N5980_RS02510 (N5980_02510) 517341..518348 + 1008 WP_004786889.1 DNA-directed RNA polymerase subunit alpha -
N5980_RS02515 (N5980_02515) 518367..518732 + 366 WP_004786886.1 50S ribosomal protein L17 -
N5980_RS02520 (N5980_02520) 518940..520430 + 1491 WP_175966134.1 NAD(P)/FAD-dependent oxidoreductase -
N5980_RS02525 (N5980_02525) 520484..521656 - 1173 WP_005233750.1 acyl-CoA dehydrogenase family protein -
N5980_RS02530 (N5980_02530) 521839..522096 + 258 WP_125278962.1 succinate dehydrogenase assembly factor 2 Antitoxin
N5980_RS02535 (N5980_02535) 522089..522475 + 387 WP_175966132.1 hypothetical protein Toxin
N5980_RS02540 (N5980_02540) 523022..524062 + 1041 WP_175966130.1 hypothetical protein -
N5980_RS02545 (N5980_02545) 524135..524707 + 573 WP_005233757.1 rhombosortase -
N5980_RS02550 (N5980_02550) 524885..527167 + 2283 WP_175966128.1 TRAP transporter large permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Flavinator of succinate dehydrogenase

(10-80)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 15204.28 Da        Isoelectric Point: 10.0581

>T258875 WP_175966132.1 NZ_CP104651:522089-522475 [Acinetobacter variabilis]
MDNRCFKLRRSKCALVFQLFIFAVLMFLLYQLLPVTIWLVCGVIGLVIYQLFYRKTPHIEQFEYLDGREWSLTAAAQGTR
RVLISHVIDHQAYIVVYFQHAKARPLLIWCDQLPFKQWKSLKVLTKIL

Download         Length: 387 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 10309.80 Da        Isoelectric Point: 4.4709

>AT258875 WP_125278962.1 NZ_CP104651:521839-522096 [Acinetobacter variabilis]
MTDDITLEERKVIYRARRGLKEIDVYFDPYVKNYYLNADPFEKEMFAELVAQEDPDLLDWFMEVSEPPRPELKDFIKKLK
FYVHG

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References