Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1178838..1179109 | Replicon | chromosome |
| Accession | NZ_CP104649 | ||
| Organism | Escherichia coli strain PNUSAE008512 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1178876..1178979 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1178838..1179109 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5913_RS06280 | 1175995..1177434 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5913_RS06285 | 1177552..1177788 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N5913_RS06290 | 1177893..1178084 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N5913_RS06295 | 1178085..1178741 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 1178838..1179109 | + | 272 | - | - | Antitoxin |
| - | 1178876..1178979 | - | 104 | - | - | Toxin |
| N5913_RS06300 | 1179137..1179478 | - | 342 | WP_000976483.1 | YebY family protein | - |
| N5913_RS06305 | 1179491..1180363 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| N5913_RS06310 | 1180367..1180741 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| N5913_RS06315 | 1180880..1181110 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5913_RS06320 | 1181212..1181868 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5913_RS06325 | 1181892..1182554 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258848 NZ_CP104649:c1178979-1178876 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258848 NZ_CP104649:1178838-1179109 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
