Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5335815..5336086 | Replicon | chromosome |
| Accession | NZ_CP104647 | ||
| Organism | Escherichia coli strain PNUSAE008406 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5335853..5335956 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5335815..5336086 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5921_RS26630 | 5332972..5334411 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5921_RS26635 | 5334529..5334765 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N5921_RS26640 | 5334870..5335061 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N5921_RS26645 | 5335062..5335718 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 5335815..5336086 | + | 272 | - | - | Antitoxin |
| - | 5335853..5335956 | - | 104 | - | - | Toxin |
| N5921_RS26650 | 5336114..5336455 | - | 342 | WP_000976483.1 | YebY family protein | - |
| N5921_RS26655 | 5336468..5337340 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| N5921_RS26660 | 5337344..5337718 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| N5921_RS26665 | 5337857..5338087 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5921_RS26670 | 5338189..5338845 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5921_RS26675 | 5338869..5339531 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258838 NZ_CP104647:c5335956-5335853 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258838 NZ_CP104647:5335815-5336086 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
