Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5317122..5317393 | Replicon | chromosome |
| Accession | NZ_CP104645 | ||
| Organism | Escherichia coli strain PNUSAE019785 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5317160..5317263 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5317122..5317393 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5932_RS26465 | 5314279..5315718 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5932_RS26470 | 5315836..5316072 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N5932_RS26475 | 5316177..5316368 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N5932_RS26480 | 5316369..5317025 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 5317122..5317393 | + | 272 | - | - | Antitoxin |
| - | 5317160..5317263 | - | 104 | - | - | Toxin |
| N5932_RS26485 | 5317421..5317762 | - | 342 | WP_000976483.1 | YebY family protein | - |
| N5932_RS26490 | 5317775..5318647 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| N5932_RS26495 | 5318651..5319025 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| N5932_RS26500 | 5319164..5319394 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5932_RS26505 | 5319496..5320152 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5932_RS26510 | 5320176..5320838 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258806 NZ_CP104645:c5317263-5317160 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258806 NZ_CP104645:5317122-5317393 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
