Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1638743..1639014 | Replicon | chromosome |
| Accession | NZ_CP104629 | ||
| Organism | Escherichia coli strain AHM21C2872I | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1638781..1638884 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1638743..1639014 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5855_RS07710 | 1635900..1637339 | + | 1440 | WP_024227172.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5855_RS07715 | 1637457..1637693 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N5855_RS07720 | 1637798..1637989 | + | 192 | WP_001313035.1 | YebW family protein | - |
| N5855_RS07725 | 1637990..1638646 | - | 657 | WP_021556895.1 | protein-serine/threonine phosphatase | - |
| - | 1638743..1639014 | + | 272 | - | - | Antitoxin |
| - | 1638781..1638884 | - | 104 | - | - | Toxin |
| N5855_RS07730 | 1639042..1639383 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N5855_RS07735 | 1639396..1640268 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| N5855_RS07740 | 1640272..1640646 | - | 375 | WP_021556896.1 | CopC domain-containing protein YobA | - |
| N5855_RS07745 | 1640785..1641015 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5855_RS07750 | 1641117..1641773 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5855_RS07755 | 1641797..1642459 | + | 663 | WP_284657475.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258673 NZ_CP104629:c1638884-1638781 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258673 NZ_CP104629:1638743-1639014 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
