Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1877338..1877483 | Replicon | chromosome |
| Accession | NZ_CP104627 | ||
| Organism | Klebsiella pneumoniae strain AHM21C2836KI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1877374..1877476 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1877338..1877483 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5857_RS09070 | 1872468..1874528 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| N5857_RS09075 | 1874532..1875191 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| N5857_RS09080 | 1875270..1875500 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N5857_RS09085 | 1875613..1875987 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N5857_RS09090 | 1875991..1876860 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| N5857_RS09095 | 1876877..1877215 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1877338..1877483 | - | 146 | - | - | Antitoxin |
| - | 1877374..1877476 | + | 103 | - | - | Toxin |
| N5857_RS09100 | 1877851..1877994 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N5857_RS09105 | 1878099..1879067 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| N5857_RS09110 | 1879224..1879877 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| N5857_RS09115 | 1879874..1880065 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N5857_RS09120 | 1880163..1880402 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N5857_RS09125 | 1880518..1881951 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T258659 NZ_CP104627:1877374-1877476 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT258659 NZ_CP104627:c1877483-1877338 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
