Detailed information of TA system TA025863

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yxiD-yxxD/-
• Location: 3575342..3576130
• Accession: NC_016784
• Organism: Bacillus amyloliquefaciens subsp. plantarum CAU B946

Toxin (Protein)

• Gene name: yxiD
• Uniprot ID: -
• Locus tag: BACAU_RS20670
• Protein ID: WP_079891856.1
• Coordinates: 3575789..3576130 (-)
• Length: 114 a.a.

Antitoxin (Protein)

• Gene name: yxxD
• Uniprot ID: -
• Locus tag: BACAU_RS17425
• Protein ID: WP_014305975.1
• Coordinates: 3575342..3575779 (-)
• Length: 146 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BACAU_RS17390	3570874..3571410	+	537	WP_014305969.1	chromate resistance efflux protein ChrA	-
BACAU_RS17395	3571436..3571654	-	219	WP_014305970.1	hypothetical protein	-
BACAU_RS17400	3571651..3572196	-	546	WP_014305971.1	flavodoxin family protein	-
BACAU_RS17405	3572319..3573200	+	882	WP_003151293.1	LysR family transcriptional regulator	-
BACAU_RS17410	3573286..3574002	-	717	WP_014305972.1	endonuclease V	-
BACAU_RS17415	3574042..3574540	-	499	Protein_3407	hypothetical protein	-
BACAU_RS17420	3574732..3575172	-	441	Protein_3408	SMI1/KNR4 family protein	-
BACAU_RS17425	3575342..3575779	-	438	WP_014305975.1	SMI1/KNR4 family protein	Antitoxin
BACAU_RS20670	3575789..3576130	-	342	WP_079891856.1	HNH endonuclease	Toxin
BACAU_RS20675	3576749..3577087	-	339	Protein_3411	transposase	-
BACAU_RS20325	3577726..3578191	-	466	Protein_3412	DUF2004 domain-containing protein	-
BACAU_RS20430	3578192..3578692	-	501	Protein_3413	HNH endonuclease	-
BACAU_RS17445	3578863..3579168	-	306	WP_003151282.1	hypothetical protein	-
BACAU_RS17450	3579185..3580930	-	1746	WP_014305979.1	ribonuclease YeeF family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 114 a.a.
• Molecular weight: 13224.74 Da
• Isoelectric Point: 9.6942

>T25863 WP_079891856.1 NC_016784:c3576130-3575789 [Bacillus velezensis CAU B946]
IKEALRNNNYEKLTPKETAKHRSKFTSSLKDRLIAEWEEKTNQKWPRYTEEVFDKHGEVARSIGQPYDAHHIIENNFGGP
HEWWNIHPAKYPDEHQAGIHGKGAPSGKLFPRR

Nucleotide

• Length: 342 bp

>T25863 NC_016784:c3576130-3575789 [Bacillus velezensis CAU B946]
ATAAAAGAAGCTTTAAGAAATAATAACTATGAGAAATTAACACCAAAAGAAACAGCTAAGCATAGGAGCAAATTCACATC
AAGTTTGAAAGATAGATTGATTGCAGAATGGGAAGAAAAAACCAATCAAAAGTGGCCTAGATATACAGAAGAGGTTTTTG
ATAAGCATGGAGAAGTTGCTCGAAGTATTGGTCAACCGTACGATGCCCATCATATCATAGAGAACAACTTTGGTGGCCCT
CACGAATGGTGGAATATTCATCCGGCAAAATATCCGGATGAACACCAAGCGGGTATACATGGAAAGGGAGCACCATCAGG
AAAACTTTTTCCAAGGAGGTAA

Antitoxin

Protein

• Length: 146 a.a.
• Molecular weight: 17050.05 Da
• Isoelectric Point: 3.8675

>AT25863 WP_014305975.1 NC_016784:c3575779-3575342 [Bacillus velezensis CAU B946]
MAEFEFINHLENKTYKVPEEDILKAEQRMNVDIPNDLKQLYLEVGYGFIKGESDNAINRILGPGAVADIRLREGIFEFDP
DLDELYDDENKLIFFEVNEGVYISIDLRLANNPIFYFDTQIAESLEDFFKKFLNDNEYYIDLIED

Nucleotide

• Length: 438 bp

>AT25863 NC_016784:c3575779-3575342 [Bacillus velezensis CAU B946]
ATGGCTGAATTTGAATTTATAAATCATTTAGAAAATAAAACATATAAGGTACCTGAAGAGGATATATTAAAAGCTGAACA
AAGAATGAACGTAGATATTCCAAATGATTTAAAACAATTATATTTAGAAGTCGGTTATGGTTTTATTAAAGGTGAAAGTG
ATAATGCAATTAATAGGATATTGGGGCCAGGGGCAGTTGCCGACATTAGACTAAGAGAAGGAATTTTTGAGTTTGACCCA
GATTTAGATGAACTTTATGATGACGAAAATAAACTTATTTTTTTTGAAGTAAACGAGGGTGTTTATATTTCTATAGATTT
ACGATTGGCAAATAATCCAATATTTTATTTTGACACTCAAATAGCTGAATCTTTAGAGGATTTTTTTAAAAAGTTCCTCA
ATGATAATGAATATTATATTGATTTAATTGAGGATTAG