Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | shpAB/BrnT-BrnA |
Location | 492218..492794 | Replicon | chromosome |
Accession | NZ_CP104613 | ||
Organism | Escherichia coli strain AHM8C212RI |
Toxin (Protein)
Gene name | shpA | Uniprot ID | - |
Locus tag | N5856_RS02375 | Protein ID | WP_094317815.1 |
Coordinates | 492218..492505 (+) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | shpB | Uniprot ID | A0A829G8Z0 |
Locus tag | N5856_RS02380 | Protein ID | WP_000063156.1 |
Coordinates | 492492..492794 (+) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
N5856_RS02360 (487797) | 487797..489182 | - | 1386 | WP_094317814.1 | restriction endonuclease subunit S | - |
N5856_RS02365 (489172) | 489172..490791 | - | 1620 | WP_001672353.1 | class I SAM-dependent DNA methyltransferase | - |
N5856_RS02370 (490855) | 490855..492021 | - | 1167 | WP_000800829.1 | restriction endonuclease | - |
N5856_RS02375 (492218) | 492218..492505 | + | 288 | WP_094317815.1 | BrnT family toxin | Toxin |
N5856_RS02380 (492492) | 492492..492794 | + | 303 | WP_000063156.1 | BrnA antitoxin family protein | Antitoxin |
N5856_RS02385 (492828) | 492828..493784 | - | 957 | WP_001295525.1 | GTPase | - |
N5856_RS02390 (493795) | 493795..493998 | - | 204 | WP_000467859.1 | YbdD/YjiX family protein | - |
N5856_RS02395 (494129) | 494129..496279 | - | 2151 | WP_001298933.1 | pyruvate/proton symporter BtsT | - |
N5856_RS02400 (496672) | 496672..497184 | - | 513 | WP_001175455.1 | 4-hydroxyphenylacetate 3-monooxygenase reductase subunit | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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