Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1943704..1943849 | Replicon | chromosome |
| Accession | NZ_CP104603 | ||
| Organism | Klebsiella pneumoniae strain AHM8C161BI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1943740..1943842 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1943704..1943849 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5862_RS09655 | 1938834..1940894 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| N5862_RS09660 | 1940898..1941557 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| N5862_RS09665 | 1941636..1941866 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N5862_RS09670 | 1941979..1942353 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N5862_RS09675 | 1942357..1943226 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| N5862_RS09680 | 1943243..1943581 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1943704..1943849 | - | 146 | - | - | Antitoxin |
| - | 1943740..1943842 | + | 103 | - | - | Toxin |
| N5862_RS09685 | 1944218..1944361 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N5862_RS09690 | 1944466..1945434 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| N5862_RS09695 | 1945591..1946244 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| N5862_RS09700 | 1946241..1946432 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N5862_RS09705 | 1946530..1946769 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N5862_RS09710 | 1946885..1948318 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1876361..1948273 | 71912 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T258575 NZ_CP104603:1943740-1943842 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT258575 NZ_CP104603:c1943849-1943704 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
