Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2472750..2473021 | Replicon | chromosome |
| Accession | NZ_CP104598 | ||
| Organism | Escherichia coli strain AHM8C160RI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2472788..2472891 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2472750..2473021 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5861_RS11855 | 2469907..2471346 | + | 1440 | WP_250308186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5861_RS11860 | 2471464..2471700 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N5861_RS11865 | 2471805..2471996 | + | 192 | WP_000457842.1 | YebW family protein | - |
| N5861_RS11870 | 2471997..2472653 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2472750..2473021 | + | 272 | - | - | Antitoxin |
| - | 2472788..2472891 | - | 104 | - | - | Toxin |
| N5861_RS11875 | 2473049..2473390 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N5861_RS11880 | 2473402..2474274 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| N5861_RS11885 | 2474278..2474652 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| N5861_RS11890 | 2474791..2475021 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5861_RS11895 | 2475123..2475779 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5861_RS11900 | 2475803..2476465 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258554 NZ_CP104598:c2472891-2472788 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258554 NZ_CP104598:2472750-2473021 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTATGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTATGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
