Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079380..2079651 | Replicon | chromosome |
| Accession | NZ_CP104595 | ||
| Organism | Escherichia coli strain EC9952 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079510..2079613 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079380..2079651 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5B57_RS10195 | 2075935..2076597 | - | 663 | WP_272471713.1 | exodeoxyribonuclease X | - |
| N5B57_RS10200 | 2076621..2077277 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5B57_RS10205 | 2077379..2077609 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5B57_RS10210 | 2077748..2078122 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| N5B57_RS10215 | 2078126..2078998 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| N5B57_RS10220 | 2079011..2079352 | + | 342 | WP_024243786.1 | YebY family protein | - |
| - | 2079380..2079651 | - | 272 | - | - | Antitoxin |
| - | 2079510..2079613 | + | 104 | - | - | Toxin |
| N5B57_RS10225 | 2079748..2080404 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| N5B57_RS10230 | 2080405..2080596 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N5B57_RS10235 | 2080701..2080937 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N5B57_RS10240 | 2081055..2082494 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258527 NZ_CP104595:2079510-2079613 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258527 NZ_CP104595:c2079651-2079380 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
