Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 9389..9905 Replicon chromosome
Accession NZ_CP104583
Organism Pseudomonas sp. GD03721

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N5O88_RS00045 Protein ID WP_279531701.1
Coordinates 9618..9905 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N5O88_RS00040 Protein ID WP_279531700.1
Coordinates 9389..9628 (+) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N5O88_RS00025 (N5O88_00025) 6651..7991 + 1341 WP_279533131.1 group II intron reverse transcriptase/maturase -
N5O88_RS00030 (N5O88_00030) 8469..8870 - 402 WP_279531699.1 hypothetical protein -
N5O88_RS00035 (N5O88_00035) 8983..9204 + 222 Protein_6 IS21 family transposase -
N5O88_RS00040 (N5O88_00040) 9389..9628 + 240 WP_279531700.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
N5O88_RS00045 (N5O88_00045) 9618..9905 + 288 WP_279531701.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N5O88_RS00050 (N5O88_00050) 9944..12331 + 2388 WP_279531702.1 DEAD/DEAH box helicase family protein -
N5O88_RS00055 (N5O88_00055) 12772..13349 - 578 Protein_10 phosphatidate cytidylyltransferase -
N5O88_RS00060 (N5O88_00060) 13608..14375 - 768 WP_279531703.1 lysophospholipid acyltransferase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 8998..9228 230


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-80)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-69)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11262.02 Da        Isoelectric Point: 9.9156

>T258476 WP_279531701.1 NZ_CP104583:9618-9905 [Pseudomonas sp. GD03721]
MTYSLEFDARALKEWHKLGDTVREQFKKKLAEVLVNPRVEANRLHSLPDCYKIKLRSSGYRLVYQVIDHEVVVFVVAVDR
RDREQAYRKAAEQLK

Download         Length: 288 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9043.49 Da        Isoelectric Point: 4.6151

>AT258476 WP_279531700.1 NZ_CP104583:9389-9628 [Pseudomonas sp. GD03721]
MASINIRIDDELKVRAYRELEKLGVTPSELMRQTLQYVAERGQLPFRPVLMTEEDEALIATVCERLAAPQRVKVSLDDL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References