Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2089449..2089965 Replicon chromosome
Accession NZ_CP104579
Organism Pseudomonas oleovorans strain GD04132

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N5O83_RS10150 Protein ID WP_279534839.1
Coordinates 2089449..2089730 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N5O83_RS10155 Protein ID WP_132444928.1
Coordinates 2089720..2089965 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N5O83_RS10120 (N5O83_10115) 2085210..2085539 + 330 WP_279534837.1 hypothetical protein -
N5O83_RS10125 (N5O83_10120) 2085632..2086600 + 969 WP_254472153.1 DUF932 domain-containing protein -
N5O83_RS10130 (N5O83_10125) 2086680..2087684 + 1005 WP_254472212.1 YqaJ viral recombinase family protein -
N5O83_RS10135 (N5O83_10130) 2087776..2088726 + 951 WP_279534838.1 hydrolase or metal-binding protein -
N5O83_RS10140 (N5O83_10135) 2088698..2089195 + 498 WP_254472155.1 DNA repair protein RadC -
N5O83_RS10145 (N5O83_10140) 2089206..2089379 + 174 WP_254472156.1 hypothetical protein -
N5O83_RS10150 (N5O83_10145) 2089449..2089730 - 282 WP_279534839.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N5O83_RS10155 (N5O83_10150) 2089720..2089965 - 246 WP_132444928.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
N5O83_RS10160 (N5O83_10155) 2090154..2090852 - 699 WP_279534840.1 inovirus Gp2 family protein -
N5O83_RS10165 (N5O83_10160) 2091151..2092497 - 1347 WP_279534841.1 tyrosine-type recombinase/integrase -
N5O83_RS10170 (N5O83_10165) 2093218..2093547 + 330 Protein_2003 group II intron reverse transcriptase/maturase -
N5O83_RS10175 (N5O83_10170) 2093881..2094153 + 273 WP_003461245.1 CopG family ribbon-helix-helix protein -
N5O83_RS10180 (N5O83_10175) 2094141..2094434 + 294 WP_003461247.1 type II toxin-antitoxin system RelE/ParE family toxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2082873..2103910 21037


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10742.59 Da        Isoelectric Point: 10.6485

>T258452 WP_279534839.1 NZ_CP104579:c2089730-2089449 [Pseudomonas oleovorans]
MTYKLEFLPSALKEWEKLGHTVREQAKKKLGERLEAPKVQADALRDLPGHYKIKLRTASYRLVYRVEDDRVVVMVVAVGK
RERSTAYKAAGKR

Download         Length: 282 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8668.00 Da        Isoelectric Point: 4.1630

>AT258452 WP_132444928.1 NZ_CP104579:c2089965-2089720 [Pseudomonas oleovorans]
MQSVLADVAVSVSELKKNPTGVMAGAGGMPVAVLNHNRVMGYMVPAELYEQMLERLDDLDLIDVVNARSGEKGVPVNLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References