Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 956543..957012 Replicon chromosome
Accession NZ_CP104579
Organism Pseudomonas oleovorans strain GD04132

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N5O83_RS04485 Protein ID WP_084341184.1
Coordinates 956737..957012 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID W6R134
Locus tag N5O83_RS04480 Protein ID WP_003459395.1
Coordinates 956543..956737 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N5O83_RS04460 (N5O83_04465) 951790..952740 + 951 WP_279534461.1 bifunctional riboflavin kinase/FAD synthetase -
N5O83_RS04465 (N5O83_04470) 952737..955568 + 2832 WP_279534462.1 isoleucine--tRNA ligase -
N5O83_RS04470 (N5O83_04475) 955561..956070 + 510 WP_279534463.1 signal peptidase II -
N5O83_RS04475 (N5O83_04480) 956067..956513 + 447 WP_116619831.1 peptidylprolyl isomerase -
N5O83_RS04480 (N5O83_04485) 956543..956737 + 195 WP_003459395.1 hypothetical protein Antitoxin
N5O83_RS04485 (N5O83_04490) 956737..957012 + 276 WP_084341184.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
N5O83_RS04490 (N5O83_04495) 957064..958008 + 945 WP_279534464.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
N5O83_RS04495 (N5O83_04500) 958065..958496 - 432 WP_279534918.1 type IV pilin protein -
N5O83_RS04500 (N5O83_04505) 958486..958815 - 330 WP_011912157.1 PilY2 family type 4a fimbrial biogenesis protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10402.97 Da        Isoelectric Point: 6.7154

>T258449 WP_084341184.1 NZ_CP104579:956737-957012 [Pseudomonas oleovorans]
MLPIIWRDSARADLAEIIRYIADEAPQAARQLKNYLESAVLPLAEHPYLYRSGRVPGTRELVAHPNYVLVYRVAAECIEV
VSVLHSRQEYP

Download         Length: 276 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7366.20 Da        Isoelectric Point: 5.0495

>AT258449 WP_003459395.1 NZ_CP104579:956543-956737 [Pseudomonas oleovorans]
MSVQLSPIVSEFETQEQADSHDRWFRRKVKESLDDSRPGVPHDQVMAEMEAIIVQAEARQRGRG

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB W6R134

References