Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3284990..3285135 | Replicon | chromosome |
| Accession | NZ_CP104551 | ||
| Organism | Klebsiella pneumoniae strain K28074 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3284997..3285099 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3284990..3285135 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5911_RS16615 (N5911_16615) | 3280522..3281955 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5911_RS16620 (N5911_16620) | 3282071..3282310 | + | 240 | WP_002911393.1 | YebV family protein | - |
| N5911_RS16625 (N5911_16625) | 3282408..3282599 | + | 192 | WP_002911395.1 | YebW family protein | - |
| N5911_RS16630 (N5911_16630) | 3282596..3283249 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| N5911_RS16635 (N5911_16635) | 3283406..3284374 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| N5911_RS16640 (N5911_16640) | 3284479..3284622 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3284990..3285135 | + | 146 | - | - | Antitoxin |
| - | 3284997..3285099 | - | 103 | - | - | Toxin |
| N5911_RS16645 (N5911_16645) | 3285258..3285596 | - | 339 | WP_002911404.1 | YebY family protein | - |
| N5911_RS16650 (N5911_16650) | 3285613..3286482 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| N5911_RS16655 (N5911_16655) | 3286486..3286860 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N5911_RS16660 (N5911_16660) | 3286973..3287203 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N5911_RS16665 (N5911_16665) | 3287282..3287941 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| N5911_RS16670 (N5911_16670) | 3287945..3290005 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T258415 NZ_CP104551:c3285099-3284997 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT258415 NZ_CP104551:3284990-3285135 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
