Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1985459..1985730 | Replicon | chromosome |
| Accession | NZ_CP104536 | ||
| Organism | Escherichia coli strain E3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1985589..1985692 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1985459..1985730 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5O72_RS09600 | 1982014..1982676 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N5O72_RS09605 | 1982700..1983356 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5O72_RS09610 | 1983458..1983688 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5O72_RS09615 | 1983827..1984201 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| N5O72_RS09620 | 1984205..1985077 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| N5O72_RS09625 | 1985090..1985431 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1985459..1985730 | - | 272 | - | - | Antitoxin |
| - | 1985589..1985692 | + | 104 | - | - | Toxin |
| N5O72_RS09630 | 1985827..1986483 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| N5O72_RS09635 | 1986484..1986675 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N5O72_RS09640 | 1986780..1987016 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N5O72_RS09645 | 1987134..1988573 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258356 NZ_CP104536:1985589-1985692 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258356 NZ_CP104536:c1985730-1985459 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
