Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2219990..2220258 | Replicon | chromosome |
| Accession | NZ_CP104533 | ||
| Organism | Escherichia coli strain E10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2220118..2220220 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2219990..2220258 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5O77_RS10855 | 2216544..2217206 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N5O77_RS10860 | 2217229..2217885 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5O77_RS10865 | 2217987..2218217 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5O77_RS10870 | 2218356..2218730 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N5O77_RS10875 | 2218734..2219606 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| N5O77_RS10880 | 2219619..2219960 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2219990..2220258 | - | 269 | - | - | Antitoxin |
| - | 2220118..2220220 | + | 103 | - | - | Toxin |
| N5O77_RS10885 | 2220355..2221011 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| N5O77_RS10890 | 2221012..2221203 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N5O77_RS10895 | 2221308..2221544 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N5O77_RS10900 | 2221662..2223101 | - | 1440 | WP_261175610.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T258323 NZ_CP104533:2220118-2220220 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT258323 NZ_CP104533:c2220258-2219990 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
