Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2660904..2661172 | Replicon | chromosome |
| Accession | NZ_CP104523 | ||
| Organism | Escherichia coli strain E7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2660942..2661044 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2660904..2661172 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5O80_RS13090 | 2658061..2659500 | + | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5O80_RS13095 | 2659618..2659854 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N5O80_RS13100 | 2659959..2660150 | + | 192 | WP_001317886.1 | YebW family protein | - |
| N5O80_RS13105 | 2660151..2660807 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2660904..2661172 | + | 269 | - | - | Antitoxin |
| - | 2660942..2661044 | - | 103 | - | - | Toxin |
| N5O80_RS13110 | 2661202..2661543 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N5O80_RS13115 | 2661556..2662428 | - | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| N5O80_RS13120 | 2662432..2662806 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N5O80_RS13125 | 2662945..2663175 | + | 231 | WP_261306686.1 | DNA polymerase III subunit theta | - |
| N5O80_RS13130 | 2663277..2663933 | + | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5O80_RS13135 | 2663957..2664619 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T258275 NZ_CP104523:c2661044-2660942 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT258275 NZ_CP104523:2660904-2661172 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
