Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 70433..71058 Replicon plasmid p1
Accession NZ_CP104517
Organism Escherichia coli strain E4

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag N5O79_RS24590 Protein ID WP_000911313.1
Coordinates 70660..71058 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID V0VCB2
Locus tag N5O79_RS24585 Protein ID WP_000450520.1
Coordinates 70433..70660 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N5O79_RS24585 (N5O79_24585) 70433..70660 + 228 WP_000450520.1 toxin-antitoxin system antitoxin VapB Antitoxin
N5O79_RS24590 (N5O79_24590) 70660..71058 + 399 WP_000911313.1 type II toxin-antitoxin system VapC family toxin Toxin
N5O79_RS24595 (N5O79_24595) 71067..73220 - 2154 WP_053879280.1 type IV conjugative transfer system coupling protein TraD -
N5O79_RS24600 (N5O79_24600) 73472..74203 - 732 WP_000850423.1 conjugal transfer complement resistance protein TraT -
N5O79_RS24605 (N5O79_24605) 74217..74726 - 510 WP_000628105.1 conjugal transfer entry exclusion protein TraS -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid sitABCD iroB / iroC / iroD / iroE / iroN / vat / iutA / iucD / iucC / iucB / iucB / iucA 1..146375 146375


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-125)

Antitoxin

SpoVT-AbrB domain

(8-50)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14901.15 Da        Isoelectric Point: 7.8605

>T258232 WP_000911313.1 NZ_CP104517:70660-71058 [Escherichia coli]
MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHS
GQIRAELARQGRPVGPFDQMIAGHARSRGLIIVTNNTREFERVDGLRIEDWS

Download         Length: 399 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8596.63 Da        Isoelectric Point: 4.7513

>AT258232 WP_000450520.1 NZ_CP104517:70433-70660 [Escherichia coli]
METTVFFSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAGETWDEWFDGHNVSADFMDNREQPGMQERESF

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB V0VCB2

References