Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 257879..258150 | Replicon | chromosome |
| Accession | NZ_CP104516 | ||
| Organism | Escherichia coli strain E4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 258009..258112 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 257879..258150 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5O79_RS01320 | 254435..255097 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| N5O79_RS01325 | 255121..255777 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5O79_RS01330 | 255879..256109 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5O79_RS01335 | 256248..256622 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N5O79_RS01340 | 256626..257498 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| N5O79_RS01345 | 257511..257852 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 257879..258150 | - | 272 | - | - | Antitoxin |
| - | 258009..258112 | + | 104 | - | - | Toxin |
| N5O79_RS01350 | 258247..258903 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| N5O79_RS01355 | 258904..259095 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N5O79_RS01360 | 259200..259436 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N5O79_RS01365 | 259554..260993 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258213 NZ_CP104516:258009-258112 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT258213 NZ_CP104516:c258150-257879 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
