Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2756134..2756404 | Replicon | chromosome |
| Accession | NZ_CP104509 | ||
| Organism | Escherichia coli strain E2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2756172..2756275 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2756134..2756404 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5O74_RS13950 | 2753291..2754730 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5O74_RS13955 | 2754848..2755084 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N5O74_RS13960 | 2755189..2755380 | + | 192 | WP_000457842.1 | YebW family protein | - |
| N5O74_RS13965 | 2755381..2756037 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2756134..2756404 | + | 271 | - | - | Antitoxin |
| - | 2756172..2756275 | - | 104 | - | - | Toxin |
| N5O74_RS13970 | 2756432..2756773 | - | 342 | WP_000976476.1 | YebY family protein | - |
| N5O74_RS13975 | 2756786..2757658 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| N5O74_RS13980 | 2757662..2758036 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N5O74_RS13985 | 2758175..2758405 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5O74_RS13990 | 2758507..2759163 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5O74_RS13995 | 2759187..2759849 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258193 NZ_CP104509:c2756275-2756172 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 271 bp
>AT258193 NZ_CP104509:2756134-2756404 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
