Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 926280..926548 | Replicon | chromosome |
| Accession | NZ_CP104503 | ||
| Organism | Escherichia coli strain E1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 926318..926420 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 926280..926548 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5O81_RS04725 | 923437..924876 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5O81_RS04730 | 924994..925230 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N5O81_RS04735 | 925335..925526 | + | 192 | WP_001317886.1 | YebW family protein | - |
| N5O81_RS04740 | 925527..926183 | - | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| - | 926280..926548 | + | 269 | - | - | Antitoxin |
| - | 926318..926420 | - | 103 | - | - | Toxin |
| N5O81_RS04745 | 926578..926919 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N5O81_RS04750 | 926932..927804 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| N5O81_RS04755 | 927808..928182 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N5O81_RS04760 | 928321..928551 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5O81_RS04765 | 928653..929309 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5O81_RS04770 | 929332..929994 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T258160 NZ_CP104503:c926420-926318 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT258160 NZ_CP104503:926280-926548 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
