Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2803284..2803518 | Replicon | chromosome |
| Accession | NZ_CP104500 | ||
| Organism | Escherichia coli strain E9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2803285..2803388 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2803284..2803518 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5O75_RS13805 | 2800232..2801284 | + | 1053 | WP_001004419.1 | RecT family recombinase | - |
| N5O75_RS13810 | 2801348..2801542 | + | 195 | WP_071780718.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| N5O75_RS13815 | 2801535..2801723 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2801541..2801719 | - | 179 | NuclAT_0 | - | - |
| - | 2801541..2801719 | - | 179 | NuclAT_0 | - | - |
| - | 2801541..2801719 | - | 179 | NuclAT_0 | - | - |
| - | 2801541..2801719 | - | 179 | NuclAT_0 | - | - |
| N5O75_RS13820 | 2801830..2802111 | + | 282 | WP_001311878.1 | excisionase | - |
| N5O75_RS13825 | 2802077..2803153 | + | 1077 | WP_001189087.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2803284..2803518 | + | 235 | - | - | Antitoxin |
| - | 2803285..2803388 | - | 104 | - | - | Toxin |
| N5O75_RS13830 | 2803546..2803887 | - | 342 | WP_000976492.1 | YebY family protein | - |
| N5O75_RS13835 | 2803900..2804772 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| N5O75_RS13840 | 2804776..2805150 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| N5O75_RS13845 | 2805289..2805519 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N5O75_RS13850 | 2805621..2806277 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N5O75_RS13855 | 2806301..2806963 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2745439..2809020 | 63581 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258141 NZ_CP104500:c2803388-2803285 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT258141 NZ_CP104500:2803284-2803518 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
