Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2094122..2094265 | Replicon | chromosome |
| Accession | NZ_CP104479 | ||
| Organism | Salmonella enterica strain SalSpp_sample_09_No.5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2094160..2094263 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2094122..2094265 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4G50_RS10300 | 2090546..2091244 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| N4G50_RS10305 | 2091268..2091924 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| N4G50_RS10310 | 2092032..2092262 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| N4G50_RS10315 | 2092400..2092774 | + | 375 | WP_000168396.1 | CopC domain-containing protein YobA | - |
| N4G50_RS10320 | 2092775..2093650 | + | 876 | WP_000979696.1 | copper homeostasis membrane protein CopD | - |
| N4G50_RS10325 | 2093667..2094020 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2094122..2094265 | - | 144 | - | - | Antitoxin |
| - | 2094160..2094263 | + | 104 | - | - | Toxin |
| N4G50_RS10330 | 2094394..2094741 | - | 348 | Protein_2019 | tyrosine-type recombinase/integrase | - |
| N4G50_RS10335 | 2094753..2094836 | + | 84 | Protein_2020 | phage tail protein | - |
| N4G50_RS10340 | 2095010..2097430 | + | 2421 | WP_024157086.1 | type III secretion system effector SspH3 | - |
| N4G50_RS10345 | 2097572..2098113 | + | 542 | Protein_2022 | transposase | - |
| N4G50_RS10350 | 2098259..2098399 | - | 141 | WP_001640444.1 | hypothetical protein | - |
| N4G50_RS10355 | 2098568..2098834 | - | 267 | WP_077908710.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2097775..2098113 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T258044 NZ_CP104479:2094160-2094263 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT258044 NZ_CP104479:c2094265-2094122 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
