Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 653226..653497 | Replicon | chromosome |
| Accession | NZ_CP104472 | ||
| Organism | Escherichia coli strain UC4224 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 653264..653367 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 653226..653497 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4S17_RS03195 | 650383..651822 | + | 1440 | WP_028985418.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N4S17_RS03200 | 651940..652176 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N4S17_RS03205 | 652281..652472 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N4S17_RS03210 | 652473..653129 | - | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| - | 653226..653497 | + | 272 | - | - | Antitoxin |
| - | 653264..653367 | - | 104 | - | - | Toxin |
| N4S17_RS03215 | 653525..653866 | - | 342 | WP_000976492.1 | YebY family protein | - |
| N4S17_RS03220 | 653879..654751 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| N4S17_RS03225 | 654755..655129 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| N4S17_RS03230 | 655268..655498 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N4S17_RS03235 | 655600..656256 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N4S17_RS03240 | 656280..656942 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257990 NZ_CP104472:c653367-653264 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT257990 NZ_CP104472:653226-653497 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
