Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2713954..2714155 | Replicon | chromosome |
| Accession | NZ_CP104471 | ||
| Organism | Enterobacter hormaechei strain 80014967 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2713959..2714062 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2713954..2714155 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYP10_RS14270 (NYP10_14280) | 2710214..2711662 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NYP10_RS14275 (NYP10_14285) | 2711769..2712008 | + | 240 | WP_003859885.1 | YebV family protein | - |
| NYP10_RS14280 (NYP10_14290) | 2712043..2712687 | - | 645 | WP_047054927.1 | protein-serine/threonine phosphatase | - |
| NYP10_RS14285 (NYP10_14295) | 2712855..2713835 | + | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| NYP10_RS14290 (NYP10_14300) | 2713881..2714078 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2713954..2714155 | + | 202 | - | - | Antitoxin |
| - | 2713959..2714062 | - | 104 | - | - | Toxin |
| NYP10_RS14295 (NYP10_14305) | 2714204..2714542 | - | 339 | WP_045343594.1 | YebY family protein | - |
| NYP10_RS14300 (NYP10_14310) | 2714559..2715428 | - | 870 | WP_047054929.1 | copper homeostasis membrane protein CopD | - |
| NYP10_RS14305 (NYP10_14315) | 2715430..2715801 | - | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| NYP10_RS14310 (NYP10_14320) | 2715939..2716169 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NYP10_RS14315 (NYP10_14325) | 2716281..2716931 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| NYP10_RS14320 (NYP10_14330) | 2716956..2717618 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257980 NZ_CP104471:c2714062-2713959 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT257980 NZ_CP104471:2713954-2714155 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
