Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2579799..2580070 | Replicon | chromosome |
| Accession | NZ_CP104442 | ||
| Organism | Escherichia coli strain HBUT-L | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2579837..2579940 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2579799..2580070 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1H43_RS12585 | 2576956..2578395 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N1H43_RS12590 | 2578513..2578749 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N1H43_RS12595 | 2578854..2579045 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N1H43_RS12600 | 2579046..2579702 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2579799..2580070 | + | 272 | - | - | Antitoxin |
| - | 2579837..2579940 | - | 104 | - | - | Toxin |
| N1H43_RS12605 | 2580098..2580439 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N1H43_RS12610 | 2580452..2581324 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| N1H43_RS12615 | 2581328..2581702 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| N1H43_RS12620 | 2581841..2582071 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N1H43_RS12625 | 2582173..2582829 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N1H43_RS12630 | 2582853..2583515 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257936 NZ_CP104442:c2579940-2579837 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT257936 NZ_CP104442:2579799-2580070 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
