Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 1242151..1242601 Replicon chromosome
Accession NZ_CP104408
Organism Pseudomonas fluorescens strain Ant01

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N4P55_RS05425 Protein ID WP_262667082.1
Coordinates 1242329..1242601 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A172YWJ3
Locus tag N4P55_RS05420 Protein ID WP_064450837.1
Coordinates 1242151..1242339 (+) Length 63 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N4P55_RS05395 (N4P55_05405) 1237714..1239084 + 1371 WP_262667081.1 aromatic acid/H+ symport family MFS transporter -
N4P55_RS05400 (N4P55_05410) 1239138..1239941 - 804 WP_221294005.1 transglutaminase family protein -
N4P55_RS05405 (N4P55_05415) 1240129..1241148 + 1020 WP_064450835.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
N4P55_RS05410 (N4P55_05420) 1241204..1241464 - 261 WP_016974596.1 YebG family protein -
N4P55_RS05415 (N4P55_05425) 1241795..1241998 + 204 Protein_1055 DUF6124 family protein -
N4P55_RS05420 (N4P55_05430) 1242151..1242339 + 189 WP_064450837.1 hypothetical protein Antitoxin
N4P55_RS05425 (N4P55_05435) 1242329..1242601 + 273 WP_262667082.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N4P55_RS05430 (N4P55_05440) 1242767..1243255 + 489 WP_064450838.1 phosphate-starvation-inducible PsiE family protein -
N4P55_RS05435 (N4P55_05445) 1243252..1243569 - 318 WP_064450839.1 DUF3509 domain-containing protein -
N4P55_RS05440 (N4P55_05450) 1243869..1245155 - 1287 WP_262667083.1 serine/threonine transporter -
N4P55_RS05445 (N4P55_05455) 1245218..1246594 - 1377 WP_262667084.1 L-serine ammonia-lyase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10196.86 Da        Isoelectric Point: 9.5764

>T257918 WP_262667082.1 NZ_CP104408:1242329-1242601 [Pseudomonas fluorescens]
MLVECAPAARAQLRQITDYISDRNPVAALELNQAIEACVLALSRRPHLYRPGRVVGTREMVVHPNYLVVYQVTDSIRVLS
VLHARQRYPS

Download         Length: 273 bp

Antitoxin


Download         Length: 63 a.a.        Molecular weight: 6856.54 Da        Isoelectric Point: 4.3558

>AT257918 WP_064450837.1 NZ_CP104408:1242151-1242339 [Pseudomonas fluorescens]
MDTSFSSGIPTDTEAQADSYDRWFRAKVQAALDDPSPGIPHDEVMAEMRELIESKRKKGDAG

Download         Length: 189 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A172YWJ3

References