Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2803904..2804113 | Replicon | chromosome |
| Accession | NZ_CP104401 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain colR | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2803917..2804020 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2803904..2804113 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5F15_RS13540 (N5F15_13540) | 2800172..2801620 | + | 1449 | WP_197731399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N5F15_RS13545 (N5F15_13545) | 2801727..2801966 | + | 240 | WP_003859885.1 | YebV family protein | - |
| N5F15_RS13550 (N5F15_13550) | 2802001..2802645 | - | 645 | WP_047733789.1 | protein-serine/threonine phosphatase | - |
| N5F15_RS13555 (N5F15_13555) | 2802813..2803793 | + | 981 | WP_047733791.1 | VirK/YbjX family protein | - |
| N5F15_RS13560 (N5F15_13560) | 2803839..2804036 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2803904..2804113 | + | 210 | - | - | Antitoxin |
| - | 2803917..2804020 | - | 104 | - | - | Toxin |
| N5F15_RS13565 (N5F15_13565) | 2804163..2804501 | - | 339 | WP_033486805.1 | YebY family protein | - |
| N5F15_RS13570 (N5F15_13570) | 2804518..2805387 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| N5F15_RS13575 (N5F15_13575) | 2805389..2805760 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| N5F15_RS13580 (N5F15_13580) | 2805898..2806128 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| N5F15_RS13585 (N5F15_13585) | 2806240..2806890 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| N5F15_RS13590 (N5F15_13590) | 2806914..2807576 | + | 663 | WP_096946701.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257871 NZ_CP104401:c2804020-2803917 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT257871 NZ_CP104401:2803904-2804113 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
