Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 274841..275109 | Replicon | chromosome |
| Accession | NZ_CP104371 | ||
| Organism | Escherichia coli strain 2021CK-01784 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 274968..275071 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 274841..275109 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4502_RS01370 | 271394..272056 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N4502_RS01375 | 272080..272736 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N4502_RS01380 | 272838..273068 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N4502_RS01385 | 273207..273581 | + | 375 | WP_039720136.1 | CopC domain-containing protein YobA | - |
| N4502_RS01390 | 273585..274457 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| N4502_RS01395 | 274470..274811 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 274841..275109 | - | 269 | - | - | Antitoxin |
| - | 274968..275071 | + | 104 | - | - | Toxin |
| N4502_RS01400 | 275206..275862 | + | 657 | WP_039720135.1 | protein-serine/threonine phosphatase | - |
| N4502_RS01405 | 275863..276054 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N4502_RS01410 | 276159..276395 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N4502_RS01415 | 276513..277952 | - | 1440 | WP_039720143.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 267530..290949 | 23419 | |
| - | inside | Prophage | - | - | 265667..290949 | 25282 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257795 NZ_CP104371:274968-275071 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT257795 NZ_CP104371:c275109-274841 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
