Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4174006..4174503 Replicon chromosome
Accession NZ_CP104326
Organism Escherichia coli strain THB42-F1

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag N0470_RS20415 Protein ID WP_001173343.1
Coordinates 4174006..4174179 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag N0470_RS20420 Protein ID WP_000398619.1
Coordinates 4174207..4174503 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N0470_RS20405 (4170676) 4170676..4172133 + 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -
N0470_RS20410 (4172370) 4172370..4173887 + 1518 WP_001295074.1 lysine--tRNA ligase -
N0470_RS20415 (4174006) 4174006..4174179 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
N0470_RS20420 (4174207) 4174207..4174503 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
N0470_RS20425 (4174730) 4174730..4175002 - 273 WP_000405651.1 GNAT family N-acetyltransferase -
N0470_RS20430 (4175014) 4175014..4175244 - 231 WP_000371704.1 4Fe-4S mono-cluster protein YjdI -
N0470_RS20435 (4175425) 4175425..4177056 + 1632 WP_001216477.1 sensor histidine kinase -
N0470_RS20440 (4177053) 4177053..4177772 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T257610 WP_001173343.1 NZ_CP104326:c4174179-4174006 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT257610 WP_000398619.1 NZ_CP104326:c4174503-4174207 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References