Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1980188..1980333 | Replicon | chromosome |
| Accession | NZ_CP104312 | ||
| Organism | Klebsiella pneumoniae strain KP8132 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1980224..1980326 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1980188..1980333 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N2X67_RS09650 (N2X67_09650) | 1975318..1977378 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| N2X67_RS09655 (N2X67_09655) | 1977382..1978041 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| N2X67_RS09660 (N2X67_09660) | 1978120..1978350 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N2X67_RS09665 (N2X67_09665) | 1978463..1978837 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N2X67_RS09670 (N2X67_09670) | 1978841..1979710 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| N2X67_RS09675 (N2X67_09675) | 1979727..1980065 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1980188..1980333 | - | 146 | - | - | Antitoxin |
| - | 1980224..1980326 | + | 103 | - | - | Toxin |
| N2X67_RS09680 (N2X67_09680) | 1980701..1980844 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N2X67_RS09685 (N2X67_09685) | 1980949..1981917 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| N2X67_RS09690 (N2X67_09690) | 1982074..1982727 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| N2X67_RS09695 (N2X67_09695) | 1982724..1982915 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N2X67_RS09700 (N2X67_09700) | 1983013..1983252 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N2X67_RS09705 (N2X67_09705) | 1983368..1984801 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T257560 NZ_CP104312:1980224-1980326 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT257560 NZ_CP104312:c1980333-1980188 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
