Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5135832..5136000 | Replicon | chromosome |
| Accession | NC_016612 | ||
| Organism | Klebsiella oxytoca KCTC 1686 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5135839..5135942 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5135832..5136000 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KOX_RS23635 | 5131106..5131624 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| KOX_RS23640 | 5131643..5132407 | + | 765 | WP_014229834.1 | molecular chaperone | - |
| KOX_RS23645 | 5132410..5134740 | + | 2331 | WP_014229835.1 | fimbrial biogenesis outer membrane usher protein | - |
| KOX_RS23650 | 5134755..5135714 | + | 960 | WP_014229836.1 | spore coat U domain-containing protein | - |
| - | 5135832..5136000 | + | 169 | - | - | Antitoxin |
| - | 5135839..5135942 | - | 104 | - | - | Toxin |
| KOX_RS23655 | 5136099..5136437 | - | 339 | WP_004103344.1 | YebY family protein | - |
| KOX_RS23660 | 5136454..5137323 | - | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| KOX_RS23665 | 5137328..5137702 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| KOX_RS23670 | 5137838..5138068 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| KOX_RS23675 | 5138147..5138806 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| KOX_RS23680 | 5138813..5140873 | - | 2061 | WP_014229840.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T25756 NC_016612:c5135942-5135839 [Klebsiella michiganensis KCTC 1686]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT25756 NC_016612:5135832-5136000 [Klebsiella michiganensis KCTC 1686]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
