Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2141818..2142089 | Replicon | chromosome |
| Accession | NZ_CP104309 | ||
| Organism | Escherichia coli O157:H7 strain 380-94 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2141948..2142051 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2141818..2142089 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUE46_RS10650 | 2138373..2139035 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| NUE46_RS10655 | 2139059..2139715 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NUE46_RS10660 | 2139817..2140047 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NUE46_RS10665 | 2140186..2140560 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| NUE46_RS10670 | 2140564..2141436 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| NUE46_RS10675 | 2141449..2141790 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2141818..2142089 | - | 272 | - | - | Antitoxin |
| - | 2141948..2142051 | + | 104 | - | - | Toxin |
| NUE46_RS10680 | 2142186..2142842 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| NUE46_RS10685 | 2142843..2143034 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NUE46_RS10690 | 2143139..2143375 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NUE46_RS10695 | 2143493..2144932 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257535 NZ_CP104309:2141948-2142051 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT257535 NZ_CP104309:c2142089-2141818 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
