Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2748507..2748650 | Replicon | chromosome |
| Accession | NZ_CP104285 | ||
| Organism | Enterobacter mori strain JT.W3M11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2748512..2748615 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2748507..2748650 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N2K86_RS12940 (N2K86_12940) | 2744780..2746222 | + | 1443 | WP_260658863.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N2K86_RS12945 (N2K86_12945) | 2746327..2746566 | + | 240 | WP_042717979.1 | YebV family protein | - |
| N2K86_RS12950 (N2K86_12950) | 2746601..2747239 | - | 639 | WP_260658864.1 | protein-serine/threonine phosphatase | - |
| N2K86_RS12955 (N2K86_12955) | 2747407..2748348 | + | 942 | WP_260658865.1 | VirK/YbjX family protein | - |
| - | 2748507..2748650 | + | 144 | - | - | Antitoxin |
| - | 2748512..2748615 | - | 104 | - | - | Toxin |
| N2K86_RS12960 (N2K86_12960) | 2748754..2749092 | - | 339 | WP_010432621.1 | YebY family protein | - |
| N2K86_RS12965 (N2K86_12965) | 2749109..2749978 | - | 870 | WP_260658866.1 | copper homeostasis membrane protein CopD | - |
| N2K86_RS12970 (N2K86_12970) | 2749980..2750351 | - | 372 | WP_260661675.1 | CopC domain-containing protein YobA | - |
| N2K86_RS12975 (N2K86_12975) | 2750489..2750719 | + | 231 | WP_010432616.1 | DNA polymerase III subunit theta | - |
| N2K86_RS12980 (N2K86_12980) | 2750830..2751480 | + | 651 | WP_260658867.1 | carbon-nitrogen hydrolase family protein | - |
| N2K86_RS12985 (N2K86_12985) | 2751505..2752167 | + | 663 | WP_260658868.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257477 NZ_CP104285:c2748615-2748512 [Enterobacter mori]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT257477 NZ_CP104285:2748507-2748650 [Enterobacter mori]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
